Imagine waking up to the tantalizing aroma of Everything Bagel Egg Muffins wafting through your kitchen, a delightful blend of savory spices that promises to awaken your senses and kickstart your day. These fluffy, golden muffins are filled with rich flavors and a satisfying texture, making them the perfect companion for your morning coffee or a quick snack during a busy afternoon.
Every bite takes me back to lazy Sunday mornings spent in my grandmother’s kitchen, where we’d share stories over freshly baked treats. Ideal for brunch gatherings or as a grab-and-go breakfast, these muffins are not just a meal; they’re an experience bursting with anticipation and joy that will have you eagerly reaching for seconds.
Why Will You Keep Making Everything Bagel Egg Muffins?
Savory flavor from the combination of cheddar cheese and everything bagel seasoning makes each bite a delightful experience. Quick prep time of just 10 minutes means you can whip these up even on busy mornings. Nutrient-packed with eggs and green onions, they’re not just tasty—they’re wholesome too! Versatile servings allow for easy customization; add your favorite veggies or proteins! Perfect for meal prep, these muffins store well, ensuring you always have a delicious snack on hand.
Everything Bagel Egg Muffins Ingredients
For the Batter
- 8 large eggs (beaten) – Eggs provide a fluffy texture and are the main source of protein in these muffins.
- 1/4 cup milk (or dairy-free alternative) – Milk adds creaminess; use almond or oat milk for a dairy-free option.
- 1/2 cup cheddar cheese (shredded) – Cheddar enhances flavor and adds gooeyness when baked.
- 1/4 cup green onions (chopped) – Fresh green onions contribute a mild onion flavor and vibrant color.
- 1 teaspoon salt – Salt enhances all the flavors, ensuring your muffins taste delicious.
- 1 teaspoon pepper – Pepper adds a subtle kick that complements the savory ingredients.
For Everything Bagel Seasoning
- 1 tablespoon everything bagel seasoning – This blend gives the muffins that iconic everything bagel flavor, making them irresistible!
How to Make Everything Bagel Egg Muffins

1. Preheat the oven to 350°F (175°C) and grease a muffin tin. This ensures your egg muffins won’t stick, making for easy removal and cleanup later.
2. Whisk together the 8 large eggs (beaten), 1/4 cup milk (or dairy-free alternative), 1 teaspoon salt, and 1 teaspoon pepper in a mixing bowl until well combined. You’re looking for a smooth, uniform mixture that’s full of flavor!
3. Stir in the 1/2 cup cheddar cheese (shredded) and 1/4 cup green onions (chopped). The cheese adds a delightful creaminess while the green onions bring a pop of freshness to every bite.
4. Divide the egg mixture evenly among the muffin cups, filling each about 3/4 full. This helps them rise beautifully without overflowing, creating perfect little breakfast bites.
5. Sprinkle 1 tablespoon everything bagel seasoning on top of each muffin cup. This magical blend will give your muffins that beloved bagel flavor, making them irresistible!
6. Bake in the preheated oven for 18-20 minutes, or until the muffins are set and lightly golden on top. You’ll know they’re done when they puff up nicely and look invitingly brown.
7. Allow to cool for a few minutes before removing from the muffin tin. This step is crucial for preventing breakage – patience pays off!
Optional: Garnish with additional chopped green onions for an extra touch of flavor.
Exact quantities are listed in the recipe card below.
Tips for the Best Everything Bagel Egg Muffins
- Egg Whisking: Whisk the eggs thoroughly to ensure a fluffy texture. Undermixing can lead to dense muffins.
- Cheese Choice: Use freshly shredded cheddar for optimal melting and flavor. Pre-shredded cheese often contains anti-caking agents that can affect consistency.
- Green Onion Prep: Finely chop green onions for even distribution. Larger pieces may lead to uneven bites in your Everything Bagel Egg Muffins.
- Muffin Cup Fill: Fill each muffin cup about 3/4 full to allow room for rising. Overfilling can cause overflow during baking.
- Seasoning Distribution: Be generous with everything bagel seasoning on top, but avoid clumping it together. This ensures a balanced flavor in every bite.
How to Store and Freeze Everything Bagel Egg Muffins
- Fridge: Store your Everything Bagel Egg Muffins in an airtight container for up to 3 days to maintain freshness.
- Freezer: For longer storage, freeze muffins individually wrapped in plastic wrap and then placed in a freezer-safe bag for up to 2 months.
- Reheating: To reheat, simply microwave each muffin for about 30-60 seconds or warm them in the oven at 350°F (175°C) until heated through.
- Serving Tip: Let them cool completely before storing to prevent moisture buildup, ensuring your muffins stay delicious!
Everything Bagel Egg Muffins Your Way
Get creative with these savory bites and customize them to match your taste buds!
- Dairy-Free: Substitute the milk with almond or oat milk for a creamy, dairy-free option. This keeps the muffins moist while accommodating dietary preferences. Enjoy the same delicious flavor without the dairy!
- Spicy Kick: Add 1/4 teaspoon of cayenne pepper or red pepper flakes to your egg mixture for a delightful heat. This variation brings a zesty twist that will awaken your senses in the morning!
- Veggie-Packed: Incorporate 1/2 cup of finely chopped bell peppers or spinach to boost nutrition and flavor. The colorful veggies not only enhance the visual appeal but also add a fresh taste.
- Herb-Infused: Mix in 1 tablespoon of fresh herbs like dill or parsley for an aromatic touch. This adds a refreshing burst of flavor that complements the everything bagel seasoning beautifully.
- Protein Boost: Fold in 1/2 cup of cooked and crumbled turkey bacon or sausage for added protein. These savory bits make each muffin heartier and oh-so-satisfying.
- Cheese Varieties: Swap cheddar cheese for feta, goat cheese, or pepper jack for different flavor profiles. Each cheese brings its unique taste, creating exciting new combinations every time you bake.
- Savory Sweetness: Add 1/4 cup of grated zucchini to keep muffins moist while adding subtle sweetness. This clever twist keeps things light and flavorful, perfect for those who enjoy a hint of sweetness in their savory dishes!
Make Ahead Options

These Everything Bagel Egg Muffins are perfect for meal prep, allowing you to enjoy a quick breakfast or snack throughout the week. You can easily prepare the egg mixture by whisking together 8 large beaten eggs with 1/4 cup of milk, 1 teaspoon each of salt and pepper, then folding in 1/2 cup of shredded cheddar cheese and 1/4 cup of chopped green onions. This mixture can be made up to 24 hours in advance and stored in the refrigerator. Additionally, you can pre-measure your everything bagel seasoning for convenience. When you’re ready to bake, simply preheat your oven to 350°F (175°C), grease your muffin tin, fill it with the prepared egg mixture, sprinkle the seasoning on top, and bake for 18-20 minutes until set and golden. Allow them to cool slightly before enjoying these delightful muffins that save you time all week long!
Everything Bagel Egg Muffins Recipe FAQs
What type of cheese can I use in these muffins?
While this recipe calls for shredded cheddar cheese, feel free to experiment with other cheeses like mozzarella, feta, or pepper jack for a different flavor profile. Just keep in mind that the melting characteristics may vary slightly.
Can I make these muffins dairy-free?
Absolutely! Simply substitute the 1/4 cup of milk with a dairy-free alternative like almond milk or oat milk. Additionally, you can use a dairy-free cheese to keep it completely plant-based.
How should I store leftover egg muffins?
Store any leftover Everything Bagel Egg Muffins in an airtight container in the refrigerator for up to 3 days. When you’re ready to enjoy them again, simply reheat in the microwave for about 30 seconds or until warmed through.
Can I freeze these muffins for later?
Yes! These muffins freeze beautifully. After baking, let them cool completely and then place them in a freezer-safe bag or container. They can be frozen for up to 3 months. To reheat, just pop them in the microwave or oven straight from the freezer—no need to thaw!
What if my muffins overflow while baking?
To avoid overflow, ensure you fill each muffin cup only about 3/4 full as indicated in the recipe. If you do have some that spill over, don’t worry; just keep an eye on them while they bake and trim off any excess once they’re cool!
How many servings does this recipe yield?
This recipe yields 4 servings, with each serving containing around 150 calories. It’s perfect for a quick breakfast or snack option during your busy week!

Everything Bagel Egg Muffins
Method
- Preheat the oven to 350°F (175°C) and grease a muffin tin.
- In a mixing bowl, whisk together the eggs, milk, salt, and pepper until well combined.
- Stir in the cheddar cheese and green onions.
- Divide the egg mixture evenly among the muffin cups, filling each about 3/4 full.
- Sprinkle everything bagel seasoning on top of each muffin cup.
- Bake in the preheated oven for 18-20 minutes, or until the muffins are set and lightly golden.
- Allow to cool for a few minutes before removing from the muffin tin.















